Maq Installation Fail

[jess28]

Hello,
I've been trying to install Maq onto a 64bit linux system. I've looked at the other threads that have had problems with Maq but nothing in those worked for me so I'm hoping someone might have some new answers! The ./configure step works fine, but when I try to make, I get this output:

(CDPATH="${ZSH_VERSION+.}:" && cd . && autoheader)
rm -f stamp-h1
touch config.h.in
cd . && /bin/bash ./config.status config.h
config.status: creating config.h
config.status: config.h is unchanged
make all-am
make[1]: Entering directory `/home/jess28/My_Packages/maq-0.7.1'
g++ -DHAVE_CONFIG_H -I. -Wall -m64 -D_FASTMAP -DMAQ_LONGREADS -g -O2 -c -o mapcheck.o mapcheck.cc
mapcheck.cc: In function ‘int ma_mapcheck(int, char**)’:
mapcheck.cc:60:17: warning: variable ‘fpout’ set but not used [-Wunused-but-set-variable]
FILE *fp_bfa, *fpout;
^
In file included from mapcheck.cc:11:0:
stdhash.hh: In instantiation of ‘bool hash_set_misc<keytype_t>::insert(const keytype_t&) [with keytype_t = long long unsigned int]’:
mapcheck.cc:24:45: required from here
stdhash.hh:415:81: error: ‘direct_insert_aux’ was not declared in this scope, and no declarations were found by argument-dependent lookup at the point of instantiation [-fpermissive]
int ret = direct_insert_aux(key, this->n_capacity, this->keys, this->flags, &i);
^
stdhash.hh:415:81: note: declarations in dependent base ‘__lh3_hash_base_class<long long unsigned int>’ are not found by unqualified lookup
stdhash.hh:415:81: note: use ‘this->direct_insert_aux’ instead
make[1]: *** [mapcheck.o] Error 1
make[1]: Leaving directory `/home/jess28/My_Packages/maq-0.7.1'
make: *** [all] Error 2

I've tried doing ./autogen.sh before configuring, but that did not help. I'm have no idea what to do to fix this! Any help would be greatly appreciated.

Jess

[GenoMax]

Is there a specific reason you are trying to install Maq?

Heng Li participates on this forum and may have a direct answer for you later but this may be some kind of incompatibility with current compilers and old code (6+ years).

[jess28]

I need to have it in order to use Tlex2, which would work very well for my analysis. I'm looking into other options, but so far this seems like the best tool.