Help!
I am looking for a software (such as Ssrtool or Tandem Repeats Finder) to help me spot motifs in my multiple (thousands) proteins,...
12 results in 0.0022 seconds.
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Question: Finding repeats in proteins
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which one is best for motif discobery in human paired-ends chip-seq?
Hello,
I am working on human paired-ends chip-seq data analysis.
Which software or web tools is the best for motif discovery?... -
Transcription Factor Binding Sites, Motifs and Profiles from ChIP-seq data
ChIPBase v2.0 is designed for studying transcription factor binding sites and motifs, and decoding transcriptional regulatory networks of non-coding RNAs... -
Motif enrichment in MEME - CentriMo
Hello,
I have a list of differentially epxressed gene for which I would like to see whether they are enriched over background (non DE genes) for... -
Evaluate coverage of specific motifs
Is there a method out there that would allow me to determine whether a particular sequence motif (DNA) has adequate sequencing depth of coverage across... -
MEME centrimo peak validation with known sequence
Hi!
I have done a chip-seq experiment and obtained a number of peaks. Using MACS v1.4 I obtained 1262 peaks with IDR < 0.01 between... -
are these motifs same ?
Hi all,
I was doing motif analysis in two phenotypes of the same species and found two motifs. In phenotype-A, poly-A regions was over-represented... -
Transcription factor interactions via multiple motif discovery
Hi All,
I have a high confidence ChipSeq data set for TF1 and have run MEME to discover the most likely canonical motif (motif1), which... -
AME (MEME Suite) error
Hello.
I am trying to run AME from the MEME suite. I have tried to run it 2 times, 1st within the MEME suite, which has a option limited AME installation,...Last edited by songtree; 10-24-2012, 10:05 AM. -
Bioconductor package -GADEM
Hello Everyone
I am new to R, and I am trying to use the bioconductor package rGADEM to do de nova motif analysis -
I would like to know... -
Problem with MEME installation
Has anyone else installed MEME recently? i.e. http://meme.sdsc.edu/meme/intro.html
When I run the installation at one point it calls for... -
questions on transcription factor binding to DNA
So when a transcription factor binds to a DNA site, how many hydrogen bonds are formed? (In general... like 1 or 2, or 10 or more?)
And...
