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  • JPreston
    Member
    • Jun 2013
    • 17
    #1

    Driver mutations from mouse tumor WGS data?

    Hello!

    I am trying to identify driver mutations from mouse tumor WGS data. I have a list of 1200 SNPs and small indels from an alignment to the mouse mm10 genome and I want to know the names of the genes to see if any SNPs are in known cancer genes. For human data I use mutationassesor.org, but I don't know of a similar tool for mouse data.
    Any suggestions would be greatly appreciated!!
    Thanks!
    Tags: cancer genome, gene finding, mouse, snps
    • dpryan
      Devon Ryan
      • Jul 2011
      • 3478
      #2
      Have you tried SnpEff?

        Comment

        • JPreston
          Member
          • Jun 2013
          • 17
          #3
          That looks great, Thanks!!!

            Comment

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