Unconfigured Ad

Narmneung · 10-17-2014, 05:51 PM

Hi all,

I am currently trying to assemble a ~400 Mb plant genome using Newbler version 2.8. I have Illumina Hi-Seq paired-end reads (135...

wisojo · 06-20-2014, 08:42 AM

Hey guys,

I'm trying to use the command addSolexaReads.perl to add the rest of my fastq reads to an assembly made with Newbler, but I keep...

pepperoni · 11-22-2013, 10:21 AM

Hello, I am wondering why I get two very different results in the metrics of the Newbler GSmapper
numMappedReads = 362295,...

brymerr921 · 08-12-2013, 04:51 PM

Hey everyone,

I am trying to install the Data_Analysis2.9 package in Ubuntu 13.04. I am very new to Ubuntu and Newbler, but am trying...

figo1019 · 02-21-2013, 06:36 AM

Hi All

I tried running the newbler 2.6. But when i use the flag -scaffold I don't get any of the three scaffold file. Can some body tell...

mscholz · 10-30-2012, 10:08 AM

I know this is an odd request, but here goes:

I want to be able to extract an 8KB sff to paired fastq files, and then assemble those fastqs...

ximo · 09-28-2012, 05:06 AM

Hi all

I am using Newbler 2.7 to asembly 454 and pair-end illumina sequences (runAssembly -cdna -mi 60 -short -cpu 48), but he has stoped...

dan · 09-13-2012, 07:20 PM

What's the latest version of Newbler and where do I get it? Is it 2.7?

guibar · 08-24-2012, 03:02 AM

Hi,

I have managed to install version 2.7 of the roche assembler and mapper on ubuntu 12.04 but I am left with a weird problem.
...

CPCantalapiedra · 05-21-2012, 11:58 PM

Hi,

I am using DataAnalysis_2.6_All_20110523_1850 gsMapper to map some reads to the sequences they come from, so that I know the original...

pepperoni · 04-18-2012, 07:04 PM

Hi, does anyone have Newbler/gsAssembler v2.6 manual? I have made many google searches and could not find it.
thx

ximo · 03-27-2012, 05:54 AM

Hi all,

I am trying to assembly a trancriptome with 454 and Illumina sequences using newbler2.6. The runAssembler finished without error....

ontheway · 02-16-2012, 03:17 AM

Does anyone have a copy of the newbler/GS de novo assembler software ?
Can you send me a copy?

Himalaya · 11-16-2011, 07:13 AM

Hi All
Does anyone has tried to do the quality trimming of 454 short sequence reads? My 454 short sequence reads are already trimmed for adaptors...

prettyPeas · 11-10-2011, 11:52 PM

I followed the following directions for aligning 454 reads to an assembled rna-seq dataset.
newMapping projdir
addRun [options: -p, -lib,...

Newbler Metrics