16 results in 0.0035 seconds.
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How to find secreted protein tags for my DEGs list
I have found the Differentially expressed genes between breast cancer datasets using DESeq2 further I want to find the secreted protein tags for my Differentially... -
Script to calculate Dipeptide composition
Hi all, I would like to use a script (python, shell, or perl) to calculate the percentages of dipeptide composition from multiple protein sequences (fasta... -
Exosome preps from PaxGene blood
Hi All,
Does anyone know if you can prepare exosome from blood frozen in PaxGene tubes? I tried calling Qiagen but they said they aren’t allow... -
Question: Running PSI-BLAST Against Multiple Queries
Hi, I'm new in standalone blast+ and in linux terminal. I set the bash-profile to load the PATH and BLASTDB for my blast already, but I don't know how... -
Blast multifasta protein to genome and get protein which match to genome.
Hello,
I want to blast multifasta protein to genome and get multifasta protein file with all proteins that aligned to the genome. Is there... -
Exonerate uniref90.fasta alignment to 65MB genome
Hello,
I was trying to align uniref90.fasta (10 gb) to genome for annotation.
I have 64 GB ram with 32 core.
It is already... -
Biopython pdb.DSSP fasta
Hi everyone!
I`ve a trouble with run DSSP module with protein in fasta format. Is it possible to run DSSP from biopython interface with sequence... -
Effects of Heterozygous and homozygous SNPS on RNA and Protein expression
Hello everyone, my name is Mamjoy. I am very new to this site but have been following the site keenly.
I have a question and I will be glad if... -
Protein classification
Hello,
I got a proteins from NGS scaffold DNA of Toxocara canis, de novo assembly, protein prediction using Augustus, local blastp. Attached... -
Searching for protein in fasta file
So I have protein (cas1) I want to look for in a bunch of fasta files and Pfam has a 'HMM logo' for the protein (http://pfam.xfam.org/family/PF01867... -
Protein functional classfication
Hi,
I compared 3 bacterial genomes and find some unique proteins ( ~1000) existing in the 3 organisms. Now I want to classify the proteins to some... -
Software for Site Directed Mutagenesis (In silico)
I am looking for a good tool for examining the effects of mutations in proteins. In particular, one that shows the effects of the mutated residues on... -
help with topcons membrane prediction
Hi,
I have been trying to use topcons membrane prediction.
I am trying to run the consensus one, but I am stuck with
... -
Protein to genomic alignment
Hi all,
I am trying to locate the genes that encode for a specific protein from the genome data that have been generated by whole genome... -
EST alignments without genome
Hi all,
Wondering if anyone could offer me some suggestions on how to approach an analysis. Currently, I am examining a transcriptome...
