help with topcons membrane prediction

[bio_informatics]

Hi,

I have been trying to use topcons membrane prediction.
I am trying to run the consensus one, but I am stuck with

run_blast.sh

of octopus.
I am stuck at this.
Running topcons is a 3 step process:
1) get file from run_blast.sh
2) process that output for modhmm profile
3) create .mtx file

The read_me file doesn't say clearly.
It has instructions based on OLDER version of Blast.

Can someone please help me with this?

There is an other way round this:
1) run_topcons_single.sh
2) run_topcons.sh

I fail to understand which one to use and how.

I have the dependencies for TOPCONS.sh in my PATH.

I need this prediction on standalone tools.
I have a protein file with 35 protein sequences and I have 20 such files.

Any help shall be greatly appreciated.
Thank you.

[TiborNagy]

You get an error message? Please add more details about you problem.

[bio_informatics]

I get error as:

Directory /home/robber/bin/../var/www/topcons.cbr.su.se/docroot/topcons/ does not exist

However, the aboce directory exists in the location.
I have added that location in my PATH as well.

You get an error message? Please add more details about you problem.