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akoontz11 · 04-28-2022, 08:20 AM

Hi all,

Context: I'm using the Stacks (v2.59) ref_map.pl command to analyze garden and wild samples of my species, and have aligned my...

splaisan · 03-25-2017, 06:20 AM

I am struggling with variant calling in 'Re-sequencing' mode using SMRT v4 and so far found that the VCF format generate by SMRTv4 is not valid.
...

rjorton · 02-07-2017, 04:25 PM

3rd Annual Training Course on Viral Bioinformatics and Genomics

Course dates: Monday 7th – Friday 11th of August 2017

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ronaldrcutler · 08-01-2016, 01:41 PM

Hello all,

I see that Velvet has a Columbus module to assemble genomes using a reference as a template. Although it also says this is best...

kajsa · 03-15-2016, 12:53 AM

Hi all,

I have used REPET to find transposable elements (TEs) in a genome and now I want to align the TE-copies to the TE-consensus they...

sfh838t · 04-30-2014, 06:19 AM

I have seen some posts about using velvet with a reference, but they have not helped me........
I am trying to assemble a plant genome using a...

rareaquaticbadger · 10-24-2013, 11:54 AM

Hi there,

I have been involved in a project where I have aligned my sequence data to MGSCv3, the first build of the mouse genome, which...

Daniel Fernandez · 06-27-2013, 03:21 PM

Hi, anybody can tell me about one program to assembly with a reference sequence (in Linux)
I use CAP3 but this can't use a reference sequence....

matiasfreired · 08-19-2011, 04:39 AM

Hello everyone!

I made a sequence of 454 junior GS, I want to make comparisons with the reference genome. I am interested in any delesion...

fadista · 02-15-2011, 01:11 AM

Hi,

I would like to know if someone has experience in comparing a local de novo assembly to a reference assembly and measure which one...

Comparing loci across catalogs