Hi!
I'm not an expert on informatics so i thought some of you may be able to help me...
I have a list of about 5000 genes and i...
16 results in 0.0029 seconds.
-
Script to thousands of exons
-
Script for Align some pattren and fetch highly similar sequence from gene
hello
I am new in programming, i want to match pattren in fasta sequence and extract sequence from fasta file
for example here is... -
Biopython coding help.
Hello, everybody!! I want to study PPI and for that, I need to classify the Proteins localization. For that, I got output in a text file with "Asterisk"... -
Anybody proficient with Hamilton/Venus?
Hi all, I hope this isn't a long shot or inappropriate for this forum...
I'm having troubles with a script I've written for a Hamilton... -
Selection of indexes
Hi,
How to select an optimal set of indexes from different library prep kits to design a sequence run?
An example: I am about to prepare... -
Script To Calculate Word Frequency For Many Sequences
Hello!
Who can help me with a writing a script?
1. For each file in the set (archive, probably):
Open input... -
Why is this blast script giving me empty tabular output?
Instead of using an ncbi database, I ran the makeblastdb command on a fasta file I downloaded from ncbi.
The following script will produce... -
How to run blastn against my data (and compare to ncbi nt library)?
I am new to blast and using bioinformatics tools on the command line. I recently have cleaned the data I was given (groomed, filtered, trimmed, and converted... -
Trim off variable length 'N' strings at the end of the read
Hi,
I need to remove all 'N' strings in a fastq file. I have paired end files and there are N strings at the end of some reads of variable... -
construct DNA sequence based on variation and human reference
The 1000 genome project provides us information about "variation" of thousands people's DNA sequence against the human reference DNA sequence.... -
contig mapping reference blat psl result handle
I mapped my resequencing contigs to the reference which is the same species with blat to locate these contigs, than I want to join the ordered contigs... -
extract subset of fastq based on length sequence??
Hi,
Does anyone has a script in Perl to extract a subset of fastq sequences based on length sequence?
thanks very much!... -
Automated vs. Manual fragment library preparation - need script!
Hi,
We bought "48 fragment library construction kit" for Solid 5500, which is supposed to be used in automated systems like Tecan, but... -
Extract subset of Fastq sequences based on a list of IDs
Does anyone has a script to extract a subset of fastq sequences based on a list of IDs?
similar to the "choose_FASTAs_from_list" script... -
Ruffus - a lightweight python module to run computational pipelines
This is perfect for computational biology work. Good documentation too.
I write all my code into this framework now.
ruffus....
