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  • Misbah Abbas
    Junior Member
    • Jun 2017
    • 2

    #1

    Script for Align some pattren and fetch highly similar sequence from gene

    hello

    I am new in programming, i want to match pattren in fasta sequence and extract sequence from fasta file
    for example here is fasta sequence is
    >geneA
    ATGTGCACGAGACGTCTGGTCGTCGTCGTCGCTGCGCGCGCGTATTAACCCCGCGGCTTTTCTTTCTT
    >pattren
    ATGGCGTTCGTATTAACC

    i need a script which align pattren and fetch highly similar sequence from geneA.

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