I have a large vcf file with genomic data (330 GB) and an index file that accompanies it. I ran the command:
bcftools view -f PASS...
13 results in 0.0029 seconds.
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How to regenerate an index file for a gzipped vcf file?
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Can I use tabix on vcf.gz files?
As a beginner I might have a stupid question, but I have several VCF files of different individuals that are zipped ( .vcf.gz). I want to merge these... -
TABIX on generic tab file
Hi, Everybody,
I have a 1-based, tab-delimited file with some annotations, which I would like to use with bcftools annotate on a vcf file.... -
Tabix for 1000 genomes
Hi.
I'm trying to use tabix for downloading variants from specific genomic regions, from the recently submitted phase 3 1000 genomes vcf files,... -
Issue with tabix - Could not load .tbi index
I've been trying to generate vcf.gz files and associated .vcf.gz.tbi indexes for multiple .vcf files simultaneously. I first ran into the problem of bgzip... -
Bug/Feature in Tabix?
I had posted this report on BioStars, http://www.biostars.org/p/68757/, regarding what I consider to be a bug in Tabix. If I query a single position in... -
Please help me install tabix
Hi
I am trying to install tabix/samtools on my mac os x 10.8.2.
After typing $ make I het the following message:
gcc -c... -
random access to tabix indexed vcf
I'm interested in random access for specific positions in a vcf file using perl. It seems that tabix indexed files should allow for this. Vcf.pm does... -
tabix new version 0.2.6
Hi all,
I've just noticed that there's a new version (0.2.6) of the very useful tabix package available on sourceforge (updated about two weeks... -
Using Tabix for parsing files
Hello,
I am trying to access a huge file that I downloaded from 1K Genomes and I put it on my portable HDD. I have managed to use the Ubuntu... -
help using tabix
Dear All
How do you view the tbi file generated by tabix? I am using tabix v0.2.5 to index a local BED file of gene positions.
... -
tabix and 1000 genomes data
Hi,
I am trying to access the latest release of the 1000 genomes data to check a few snps. In the README file they say:
"Each... -
tabix error on Mac
In the course of getting VCF tools running on Mac (OSX), I stumbled upon what appears to be a Mac-specific problem with tabix. The VCFtools merge-vcf...
