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genomics_search started a topic Do I need to run trim galore even if my reads are of good quality?

in Bioinformatics

03-06-2013, 11:30 AM
Do I need to run trim galore even if my reads are of good quality?

Hi,

I am a beginner in the field of genomics. So I have one doubt should I use trim galore to trim my sequence even if they are of good...

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marcela started a topic Removing reads with "N" > 4

in Bioinformatics

03-28-2011, 01:58 AM
Removing reads with "N" > 4

Hi!

I was wondering if there is a tool to remove reads that have a specific number of "N's". Fastx has the fastx_trimmer, but...

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frymor started a topic trimming in tophat

in Bioinformatics

01-10-2011, 02:42 PM
trimming in tophat

Hi all,

I am trying to analyse my PE Illumina data using tophat.

At first I run fastqc. Checking the raw data, I discovered...

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jordi started a topic 454 fasta files

in 454 Pyrosequencing

12-16-2010, 05:32 AM
454 fasta files

Hi all,
I'm a bit confused with the 454 fasta output files after a sequencing run. Below you have an example what I got. According to that my 454...

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