Originally posted by icebreaker
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I'm trying to do exactly what suggested, but I'm unsuccessful. After both commands the result was a directory/, and the output file have this appearance:
1 23 74 74 38.5676 38.5676
2 71 54 54 170.148 170.148
3 49 50 50 136.52 136.52
4 89 54 54 223.463 223.463
5 45 64 64 98.9375 98.9375
6 3 141 141 3.21277 3.21277
7 1 108 108 1.39815 1.39815
8 20 64 64 42.6719 42.6719
9 62 54 54 158.611 158.611
10 10 64 64 22.4375 22.4375
11 37 61 61 77.1639 77.1639
12 32 242 242 17.0579 17.0579
13 20 57 57 51.0175 51.0175
I can't understant this file and I don't see contigs ID, Corresponding reads, depth of contig. etc, as you explained.
Can you help me?
Thanks
Lszar
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