I want to get the genome coverage of assembly contigs.
This is a simulated dataset , so I have reference genome.
I got assembly contigs using Velvet, but I don't know how the contig is correct or wrong. If I using blast aligned the contigs to reference genomes, how do i decide the correct contig or wrong contig? if one contig part aligned to reference genome, how should I do?
thanks
This is a simulated dataset , so I have reference genome.
I got assembly contigs using Velvet, but I don't know how the contig is correct or wrong. If I using blast aligned the contigs to reference genomes, how do i decide the correct contig or wrong contig? if one contig part aligned to reference genome, how should I do?
thanks
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