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  • Joe Petrosino
    Junior Member
    • Dec 2011
    • 5
    #1

    Peaks Analysis

    Hi all,

    I used MACS on Chip seq data. Now, I must analyze about 30000 peaks.
    How can I identify the peaks localization on the genome? Are there some programs??

    Thanks
    Joe
    Tags: None
  • epi
    Member
    • Jan 2012
    • 38
    #2
    Originally posted by Joe Petrosino View Post
    Hi all,

    I used MACS on Chip seq data. Now, I must analyze about 30000 peaks.
    How can I identify the peaks localization on the genome? Are there some programs??

    Thanks
    Joe

    I think you are trying to do annotation of peaks next. Several such tools exist, chippeakanno from the bioconductor project is one coming to mind, but I am sure there are others.
    look here as well: http://nar.oxfordjournals.org/content/38/3/e13.full

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