A wonderful work!!!
thank you
thank you
-
-
comparisons
Where can I find the results that Nix suggested earlier, same sample sequences tested with different peak finding software?Napoleon Bonaparte: "Money, money, money!", bioinformatician: "Format, format, format, ..."Comment
-
Here's the thread to the ChIP Seq Challenge http://seqanswers.com/forums/showthread.php?t=1039Comment
-
Hi All,
We recently completed first chip-seq run in our laboratory. We could find a few good peaks with MACS. What I want to do is find the distribution of the distances of all the genes that are closes to the peaks on their respective 5' and 3' end. Is there a simple way to do it. Naturally I have the genomic coordinates. If anybody has done this before, it will help most helpful else I will try to write a tool to get it done.
regardsSameet Mehta (Ph.D.),
Visiting Fellow,
National Cancer Insitute,
Bethesda,
US.Comment
-
You might want to check out the following tool, which has a built in "nearest gene finder". http://havoc.genomecenter.ucdavis.ed...in/chipseq.cgi
Cheers,
LizzyComment
-
Thank you Lizzy, I think this will solve my problem.Sameet Mehta (Ph.D.),
Visiting Fellow,
National Cancer Insitute,
Bethesda,
US.Comment
-
NGS has revolutionized clinical microbiology by offering new ways to identify and surveil pathogens without prior knowledge of the target. One popular approach is 16S rRNA and ITS amplicon sequencing, which targets specific microbial markers. But studies are increasingly incorporating shotgun metagenomics, a technique that sequences all DNA from a sample without targeting specific microbial markers. This approach allows more detailed taxonomic classification, detection...Today, 06:46 AM -
Tumors contain complex mixtures of cell populations that evolve in response to treatment and host-specific factors. Tissue biopsies provide only static snapshots of a tumor’s state. But what if we could follow that evolution over time using a minimally invasive technique?
Liquid biopsies can detect tumor-derived material circulating in the bloodstream, providing a way to study treatment response, detect emerging resistance, and discover new biomarkers. Circulating...10-14-2026, 09:55 AM
Comment