Correlation of mRNA-methylation pairs

ge2sasag

Member

Join Date: Apr 2013

Posts: 43
- Share
- Tweet
#1

Correlation of mRNA-methylation pairs

10-07-2016, 01:44 AM

Hi,

I have data from 450K Illumina methylation arrays (average beta values) and microarray (log2FC). I need to compute the correlation and p-value of each CpG-gene pair but I'm not sure how to do it. All the options I try give the correlation factor between the 2 variables but what I need is to get the correlation and p-value of each pair, like this:

Table - PMC

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3931274/table/T3/

Esophageal squamous cell carcinoma (ESCC) is an aggressive tumor with dismal prognosis and high incidence and mortality in Kazakh population. MiR-34a, a direct p53 target gene, possesses tumor-suppressive properties as they mediate apoptosis, cell ...

Any light on this?
Thank you very much in advance
/G
Tags: None

Previous template Next

Topics	Statistics	Last Post
A New Method Makes Hantavirus Genome Analysis Faster and More Accessible by SEQadmin2 Started by SEQadmin2, 06-05-2026, 10:09 AM	0 responses 12 views 0 reactions	Last Post by SEQadmin2 06-05-2026, 10:09 AM
A New Single-Cell Method Maps DNA-Protein Interactions by SEQadmin2 Started by SEQadmin2, 06-04-2026, 08:59 AM	0 responses 24 views 0 reactions	Last Post by SEQadmin2 06-04-2026, 08:59 AM
Long-Read RNA Sequencing Uncovers a Hidden Layer of Immune Cell Regulation by SEQadmin2 Started by SEQadmin2, 06-02-2026, 12:03 PM	0 responses 28 views 0 reactions	Last Post by SEQadmin2 06-02-2026, 12:03 PM
DNA Methylation Study Reveals How Epigenetic Changes Pass Between Generations by SEQadmin2 Started by SEQadmin2, 06-02-2026, 11:40 AM	0 responses 22 views 0 reactions	Last Post by SEQadmin2 06-02-2026, 11:40 AM

Unconfigured Ad