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  • VCF to Circos format(s)

    Hi,

    Does anyone know if there is a utility out there (vcfutils.pl from samtools? vcftools?) that can convert variants in a VCF file to a file that can be loaded into Circos for visualization? (e.g. highlights track)

    Or has everybody just rolled their own and kept it private?

    Thanks,

    Jesse
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  • #2
    It would be definitely interesting to have a good
    = interactive+graphical+platform-independent
    visualizer for vcf files (also customized ones with extra fields).

    Comment


    • #3
      Has anyone fold a solution to vcf files and circos?

      Comment


      • #4
        Unless you want to do something really sophisticated it's often easy to parse things out with simple unix one-liners (cut, grep, awk etc.) and format them into the Circos formats.

        Comment


        • #5
          This thread is now two years old, but still seems to be the most relevant hit on the subject. Is there still not a proper VCF to CIRCOS tool?

          Comment


          • #6
            Apparently this thread is 10 years old now, yet no clear answer.

            Comment

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