Hi,
Just tried to move my stuff to a new machine with Ubuntu 11.10 (not sure if that is the problem here) with no donut. I cannot add any --sam-RG since it causes "seg fault". Anyone had similar problem ?
issue #2, tried to run it without any RG header and got this:
Only read 402653184 bytes (out of 715335926) from reference index file hg19.4.bt2
Error: Encountered internal Bowtie 2 exception (#1)
truncated index ?
Its being run on i7 machine with 6gb (4+2). Bowtie1 works just fine.
I hope that someone can help....
Just tried to move my stuff to a new machine with Ubuntu 11.10 (not sure if that is the problem here) with no donut. I cannot add any --sam-RG since it causes "seg fault". Anyone had similar problem ?
issue #2, tried to run it without any RG header and got this:
Only read 402653184 bytes (out of 715335926) from reference index file hg19.4.bt2
Error: Encountered internal Bowtie 2 exception (#1)
truncated index ?
Its being run on i7 machine with 6gb (4+2). Bowtie1 works just fine.
I hope that someone can help....
Comment