large indels in targeted sequencing

[Mali Salmon]

Hello List
We would like to find large deletions and insertions (>30bp) in targeted sequencing data. We are wondering which technology to use for that purpose. Ion torrent? illumina? single or paired reads?
Any advice would be welcome
Thanks
Mali

[vishnuamaram]

HI Mali Salmon,

What genome are you working at.

If its human genome, as of i know- go for illumina paired end. That will be of help for your experiments.

Regards,
Vishnu.