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  • chrisbala
    Member
    • Jan 2010
    • 82
    #1

    psmc bootstrap

    Hi All,

    I'm messing around with PSMC a bit.

    I'm having trouble getting the bootstrap part to run properly. I'm sort of wondering if bwa/samtools updates are causing some issues.

    The program seems to run fine for the full analysis (though I don't know if my results are reasonable or not), but I am getting division by zero errors when I try to do the bootstrap.

    Seems like a lack of heterozygous sites can cause this, but that does not seem to be my issue as I have "K" sites in my psmcfa file. The problem comes in the psmc.plot step, not in the psmc run.

    I know Heng Li is encouraging people to move on from PSMC, and perhaps that is reasonable, but still would like to sort this out.

    Thanks!

    Chris
    Tags: None
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