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  • luana
    Member
    • May 2016
    • 14

    #1

    Phaseolus vulgaris genome

    Hi guys,

    I need to find a list with all genes beans and respective functions . Anyone could suggest me any site to take this list?

    I have used the phytozome site, but but it provides a gene and its function at a time.
  • Richard Finney
    Senior Member
    • Feb 2009
    • 701

    #2
    get this file : ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/gene_info.gz

    example fetch from command line: wget ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/gene_info.gz

    ungzip (decompress) this file.

    Your "French Bean" genes begin with taxonomy id "3885".

    Example to get extract your genes : grep "^3885" gene_info

    Look at the first line of "gene_info" for figuring out what the fields on a line are.

    Most of these genes are "hyopthetical proteins" and determing their possible functions is another dimenson of diffuculty.

    Comment

    • luana
      Member
      • May 2016
      • 14

      #3
      Thanks Richard,
      but I have a doubt about the file.
      This file contains Phaseolus vulgaris' gene ? Because the names of the genes I have are different .
      Last edited by luana; 08-16-2016, 10:50 AM.

      Comment

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