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Problem in mpileup file where size of sequence does not match size of quality

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  • Problem in mpileup file where size of sequence does not match size of quality

    Hi everyone,
    I am using an mpileup file given to us by a service provider from our data, when I am processing with downstream analyses, it is showing me an error like:
    size of sequence does not equal size of quality: AaAaAaAAAAAAAAaAAaaAAaaaAAaAaaAaAAaaaaaaaaAAaaaAAAAAaAAaaaAAAAAAAAAAaaAaaaaAaaaAaAAaaAaAAaaaaaaAAAAAaaaaaA, IJ<JJJJFJAJFJJFJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJF7JJJJAJJJ<JJJJFJJJJJJJJJJJJJJJFJJJJJJJJJFJJJJ

    Can I get some help on how to fix this?
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