Header Leaderboard Ad

Collapse

IGV Green and Red reads at same locus.

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • WGS
    started a topic IGV Green and Red reads at same locus.

    IGV Green and Red reads at same locus.

    Hello,
    I am viewing bam files in IGV and have a question. These bam files are generated from whole genome paired-end sequencing performed on human genomic DNA using Illumina instrument.

    Attached IGV screenshot shows bam files aligned to human reference genome, alignment viewed as "pairs" and alignment colored by "insert size and pair orientation". As far as I know, green colored reads are indicative of tandem duplication whereas red colored reads are indicative of a deletion. But I don't know what it means when both red and green reads are present at the same genomic location (as shown in the attached screenshot)? Can anyone please help me understand this? Thanks!
    Attached Files

Latest Articles

Collapse

ad_right_rmr

Collapse

News

Collapse

Topics Statistics Last Post
Started by seqadmin, 05-26-2023, 09:22 AM
0 responses
8 views
0 likes
Last Post seqadmin  
Started by seqadmin, 05-24-2023, 09:49 AM
0 responses
12 views
0 likes
Last Post seqadmin  
Started by seqadmin, 05-23-2023, 07:14 AM
0 responses
30 views
0 likes
Last Post seqadmin  
Started by seqadmin, 05-18-2023, 11:36 AM
0 responses
115 views
0 likes
Last Post seqadmin  
Working...
X