Scripture visualisation tool help please

[seq_newbie]

Hi,

I have followed the walkthrough and got a '.bed' and a '.dot' file. However, when I try to view the .bed file with IGV it appears to be showing the entire chromosome rather than the region specified wth -start and -end. Has anyone noticed this and found a solution? If so please respond with how you resolved it.

Regards

Kevin

[Joker!sAce]

Hi,

I have the same troubles. If you use SAMtools anywhere, your output will be wrong. There are many more unresolved issues too.

I was told that this (http://molecularevolution.org/resour...pture_activity) does the trick. I'm working on it now and am not sure if it actually works well.

Best of luck!