Dear all,
Where can I download bow-tie pre-built indexes for dog (canine) genome?
thanks
Where can I download bow-tie pre-built indexes for dog (canine) genome?
thanks
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If you can't find pre-built indexes make your own. Assuming you are happy with the ENSEMBL genome for dog, it should be just a matter of running:
Hope this helpsCode:cd path/to/my/bowtie/indexes ## Download ref genome wget ftp://ftp.ensembl.org/pub/release-63/fasta/canis_familiaris/dna/Canis_familiaris.BROADD2.63.dna.toplevel.fa.gz ## Create indexes bowtie-build Canis_familiaris.BROADD2.63.dna.toplevel.fa.gz Canis_familiaris.BROADD2.63.dna.toplevel.fa.gz
Dario -
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