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The publication for this has just arrived: http://rna-seqblog.com/data-analysis...ed-mapper-rum/
Based on speed and accuracy, it looks like a contender. Comparable to GSNAP in the accuracy stakes whilst being considerably faster.
I'm, wondering if anyone has trialled it yet? I ran a simulated data set through it just to see how it ran and it went both fast and smoothly. I am unsure as to how the read counts are calculated for closely related isoforms (i.e. how it distinguishes between them). I contacted the author about it but got no response.
Has anyone else looked into this? Can you offer any thoughts?
Thanks in advance.
The publication for this has just arrived: http://rna-seqblog.com/data-analysis...ed-mapper-rum/
Based on speed and accuracy, it looks like a contender. Comparable to GSNAP in the accuracy stakes whilst being considerably faster.
I'm, wondering if anyone has trialled it yet? I ran a simulated data set through it just to see how it ran and it went both fast and smoothly. I am unsure as to how the read counts are calculated for closely related isoforms (i.e. how it distinguishes between them). I contacted the author about it but got no response.
Has anyone else looked into this? Can you offer any thoughts?
Thanks in advance.
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