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  • blue mood
    Member
    • Jul 2011
    • 21
    #1

    RNA-Seq software evaluation?

    Hi,everyone
    I am recently focusing on the RNA-Seq analysis. I want to know the performances of some softwares in this section, such as alignment, assembly, expression, SNP, and so on. Can you provide some suggestions or reference materials?
    Thank you
    Tags: None
  • blue mood
    Member
    • Jul 2011
    • 21
    #2
    I really need your help, please give me some suggestions. Thanks

    Comment

    • plabaj
      Member
      • Oct 2010
      • 95
      #3
      Unfortunatelly there is no comprehensve review/comparison.
      You have to go through many papers to figue out what is going on in the field.

      You can start by analysing the papers cited in this review:
      Ozsolak F, Milos PM. (2011) RNA sequencing: advances, challenges and opportunities. Nat Rev Genetics 12, 87-98.
      Pawel Labaj

      Comment

      • mudshark
        Senior Member
        • Jan 2009
        • 138
        #4
        also interesting:
        Checking your browser - reCAPTCHA
        http://www.ncbi.nlm.nih.gov/pubmed/21816910

        Comment

        • usad
          Member
          • Sep 2009
          • 53
          #5
          and the m erging section of the How to WIKI :-)
          Just a moment...
          http://seqanswers.com/wiki/How-to

          Comment

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