any verdicts on this one? Is it doing better than Cufflinks?
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I haven't benchmarked it thoroughly yet so I don't have an answer to your second question, but one nice feature with it is that it can generate a simulated RNA-seq dataset to compare different quantifiers on (although one might not want to include RSEM itself in such a comparison). -
Yes I tried this. However, I had problems with some places that took me too long to solve. But in the end I managed to get it done. Thank you.Comment
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NGS has revolutionized clinical microbiology by offering new ways to identify and surveil pathogens without prior knowledge of the target. One popular approach is 16S rRNA and ITS amplicon sequencing, which targets specific microbial markers. But studies are increasingly incorporating shotgun metagenomics, a technique that sequences all DNA from a sample without targeting specific microbial markers. This approach allows more detailed taxonomic classification, detection...Today, 06:46 AM -
Tumors contain complex mixtures of cell populations that evolve in response to treatment and host-specific factors. Tissue biopsies provide only static snapshots of a tumor’s state. But what if we could follow that evolution over time using a minimally invasive technique?
Liquid biopsies can detect tumor-derived material circulating in the bloodstream, providing a way to study treatment response, detect emerging resistance, and discover new biomarkers. Circulating...10-14-2026, 09:55 AM
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