Header Leaderboard Ad

Collapse

MapSplice 1.15.2 error

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • MapSplice 1.15.2 error

    Dear SEQanswer community,

    I am running MapSplice 1.15.2 and get this error:

    [Wed Nov 16 11:38:23 2011] Preparing output location mapsplice_5171114w3/
    [Wed Nov 16 11:38:23 2011] Beginning Mapsplice run (v1.15.2)
    -----------------------------------------------
    bin directory: [~/bin/MapSplice_1.15.2/bin/]
    [Wed Nov 16 11:38:23 2011] Checking for chromosomes files or directory
    [Wed Nov 16 11:38:23 2011] Checking for chromosomes files or directory passed
    [Wed Nov 16 11:38:23 2011] Checking for Bowtie index files
    [Wed Nov 16 11:38:23 2011] check reads format
    [Wed Nov 16 11:42:10 2011] merge paired end reads remove short
    [Wed Nov 16 11:55:30 2011] Converting bowtie mapped to SAM format
    [Wed Nov 16 11:55:30 2011] divide reads
    [Wed Nov 16 12:21:32 2011] Mapping reads against btau_UMD31 with Bowtie
    [Wed Nov 16 13:18:13 2011] sort segmentbwt
    [Wed Nov 16 14:43:32 2011] reads all chromo sizes
    [Wed Nov 16 14:44:05 2011] mapsplice_search
    [Wed Nov 16 15:48:00 2011] Aligning spliced reads
    [Wed Nov 16 17:27:26 2011] mapsplice_report
    error: open reads file error
    [FAILED]
    Error: mapsplice_report failed

    I have searched for errors in the logfiles but everything seems to work properly.
    Does anybody know about this problem?

    Thanks in advance,
    hardi

Latest Articles

Collapse

  • seqadmin
    How RNA-Seq is Transforming Cancer Studies
    by seqadmin



    Cancer research has been transformed through numerous molecular techniques, with RNA sequencing (RNA-seq) playing a crucial role in understanding the complexity of the disease. Maša Ivin, Ph.D., Scientific Writer at Lexogen, and Yvonne Goepel Ph.D., Product Manager at Lexogen, remarked that “The high-throughput nature of RNA-seq allows for rapid profiling and deep exploration of the transcriptome.” They emphasized its indispensable role in cancer research, aiding in biomarker...
    09-07-2023, 11:15 PM
  • seqadmin
    Methods for Investigating the Transcriptome
    by seqadmin




    Ribonucleic acid (RNA) represents a range of diverse molecules that play a crucial role in many cellular processes. From serving as a protein template to regulating genes, the complex processes involving RNA make it a focal point of study for many scientists. This article will spotlight various methods scientists have developed to investigate different RNA subtypes and the broader transcriptome.

    Whole Transcriptome RNA-seq
    Whole transcriptome sequencing...
    08-31-2023, 11:07 AM

ad_right_rmr

Collapse

News

Collapse

Topics Statistics Last Post
Started by seqadmin, 09-22-2023, 09:05 AM
0 responses
14 views
0 likes
Last Post seqadmin  
Started by seqadmin, 09-21-2023, 06:18 AM
0 responses
12 views
0 likes
Last Post seqadmin  
Started by seqadmin, 09-20-2023, 09:17 AM
0 responses
13 views
0 likes
Last Post seqadmin  
Started by seqadmin, 09-19-2023, 09:23 AM
0 responses
28 views
0 likes
Last Post seqadmin  
Working...
X