A rookie's question: how to deal with this RPKM data.
I am unfamiliar with NGS analysis. I have got data on transcriptome of several cell lines ( see below). I only got RPKM data without information of read sequence. I want to visialize this data (species: pig) to compare the expression level in different cell lines. How can I begin analysing this dataset in Galaxy?What software is suitable for analysing this data. thank you!
Ensembl Gene ID Gene Symbols Locus cell line A(RPKM)
ENSSSCG00000012637 Klhl13 chrX:98035785-98048542 1.93E+01
ENSSSCG00000019927 U1 chr14:42107294-42107453 0
ENSSSCG00000003493 CAPZB chr6:53283378-53317892 0.86
Ensembl Gene ID Gene Symbols Locus cell line A(RPKM)
ENSSSCG00000012637 Klhl13 chrX:98035785-98048542 1.93E+01
ENSSSCG00000019927 U1 chr14:42107294-42107453 0
ENSSSCG00000003493 CAPZB chr6:53283378-53317892 0.86