Hi everyone!
There are RNAseq reads for a mammalian specie with unsequenced genome. The most close mals genome that have been sequenced is related to the different genus. Did anyone try to map reads on so phylogenetically distant genomes (with bowtie/tophat)? Is there any sense to do this or it is better the de novo assemblie in this situation ? Thank you.
There are RNAseq reads for a mammalian specie with unsequenced genome. The most close mals genome that have been sequenced is related to the different genus. Did anyone try to map reads on so phylogenetically distant genomes (with bowtie/tophat)? Is there any sense to do this or it is better the de novo assemblie in this situation ? Thank you.
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