Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • How to analyze miRNA, antisense RNA, new regulon, etc. by RNA sequencing

    There are softwares for RNA sequencing analysis for gene expression, novel splice form, SNP and CNV.

    I am just wondering how to dig out the miRNA, antisense RNA, new regulon, promoter, and UTR information from RNA sequencing data? Any software for these purposes?

  • #2
    I don't know any NGS software that can do that. You will probably need one software for each task. To find promoters and UTR, you need to treat those sequences as ESTs and use the normal prediction software.

    Comment


    • #3
      you can see the deepBase database (http://deepbase.sysu.edu.cn/) for annotating and discovering small and long RNAs from deep sequencing data.

      Comment

      Latest Articles

      Collapse

      • seqadmin
        Advanced Tools Transforming the Field of Cytogenomics
        by seqadmin


        At the intersection of cytogenetics and genomics lies the exciting field of cytogenomics. It focuses on studying chromosomes at a molecular scale, involving techniques that analyze either the whole genome or particular DNA sequences to examine variations in structure and behavior at the chromosomal or subchromosomal level. By integrating cytogenetic techniques with genomic analysis, researchers can effectively investigate chromosomal abnormalities related to diseases, particularly...
        09-26-2023, 06:26 AM
      • seqadmin
        How RNA-Seq is Transforming Cancer Studies
        by seqadmin



        Cancer research has been transformed through numerous molecular techniques, with RNA sequencing (RNA-seq) playing a crucial role in understanding the complexity of the disease. Maša Ivin, Ph.D., Scientific Writer at Lexogen, and Yvonne Goepel Ph.D., Product Manager at Lexogen, remarked that “The high-throughput nature of RNA-seq allows for rapid profiling and deep exploration of the transcriptome.” They emphasized its indispensable role in cancer research, aiding in biomarker...
        09-07-2023, 11:15 PM

      ad_right_rmr

      Collapse

      News

      Collapse

      Topics Statistics Last Post
      Started by seqadmin, 09-29-2023, 09:38 AM
      0 responses
      10 views
      0 likes
      Last Post seqadmin  
      Started by seqadmin, 09-27-2023, 06:57 AM
      0 responses
      13 views
      0 likes
      Last Post seqadmin  
      Started by seqadmin, 09-26-2023, 07:53 AM
      0 responses
      30 views
      0 likes
      Last Post seqadmin  
      Started by seqadmin, 09-25-2023, 07:42 AM
      0 responses
      18 views
      0 likes
      Last Post seqadmin  
      Working...
      X