Are fastq files need more filtering or they are ready to use/assemble/map since Casava 1.8 only passed seqs are remain in fastq?
P.s
My post i guess was for bioinfo tread sorry
P.s
My post i guess was for bioinfo tread sorry
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SMART - bioinfo.uni-plovdiv.bg -
The chastity filter applies to the first 25 bases only. For most applications, it's a good idea to trim or mask adapters and low-quality bases as well. -
Thanks and what software I can use to do that in order to get at the end only the good reads which to use in the next analyses?------------
SMART - bioinfo.uni-plovdiv.bgComment
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Trimmomatic is a useful tool for this application; others can be found in the wiki under 'trimming.'Comment
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