strand specific RNA-seq mapping

qqtwee

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#1

strand specific RNA-seq mapping

05-09-2012, 04:54 AM

Does anyone know how do mapping for strand specific RNA-seq data? which tools can work well? what the parameter of tools for strand specific infomation of RNA-seq data?
Looking forward to your answer.
Thank you very much! Best wishes!
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dadada4ever

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07-10-2012, 09:23 PM

Tophat is much preferable I guess. Because it can align RNA-Seq reads with juntion, as well as the --library-type parameter to tackle with strand-specific library.
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