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  • KHubbard
    Junior Member
    • May 2011
    • 8

    #1

    RPKM for for multpile cell types in the same sample

    Is it possible to control for or normalize RPKM data from two species in the same sample? I.e., if you have two cell types in a system where a drug treatment only kills one of the two cell types, is it possible to tell if the increased RPKM value in the cell type that isn't affected by the drug treatment is 'real' or simply a product of now having a higher relative number of total transcripts in the whole population.

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