CummeRbund on CentOS6

[beldenwj]

I'm wondering if anyone has had a problem viewing cummeRbund results when using CentOS6.1? CummeRbund appears to be working fine and it generates an Rplot.pdf file that we cannot view. We can move our data set generated with cuffdiff to a Mac OS and cummeRbund works with no problems and the image files are generated. Unfortunately, the Rplot.pdf file on CentOS6.1 says it corrupted and cannot be viewed. We are using R 2.15.1 and cummeRbund v 1.2.0 (we've also tried other versions of R and cummeRbund with no success). If anyone knows a simple solution I would be very grateful.

Thanks,

Bill

[l0o0]

I'm wondering if anyone has had a problem viewing cummeRbund results when using CentOS6.1? CummeRbund appears to be working fine and it generates an Rplot.pdf file that we cannot view. We can move our data set generated with cuffdiff to a Mac OS and cummeRbund works with no problems and the image files are generated. Unfortunately, the Rplot.pdf file on CentOS6.1 says it corrupted and cannot be viewed. We are using R 2.15.1 and cummeRbund v 1.2.0 (we've also tried other versions of R and cummeRbund with no success). If anyone knows a simple solution I would be very grateful.

Thanks,

Bill

I had encountered the same problem, i could not open the pdf file produced by the CummeRbund. But i finally solved the problem, when i quit R using q(), i press 'y' when pop up 'Save workspace image? [y/n/c]:'