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  • yww
    Junior Member
    • Mar 2012
    • 1

    TCGA Level 3 RNASeq data duplicate rows for a gene

    Hi,

    I've downloaded RNASeq level 3 data from TCGA, but notice they have duplicate rows for some genes. For example:
    ANKRD20A3|441425|1of3_calculated 2 0.0378 0.003
    ANKRD20A3|441425|2of3_calculated 5 0.0926 0.0075
    ANKRD20A3|441425|3of3_calculated 0 0 0

    Anyone knows why and how should I process it? I would like to have one gene expression value (gene counts or RPKM) for one gene.

    Thanks.
  • dsmarcoantonio
    Junior Member
    • Sep 2012
    • 5

    #2
    I am having the same issue using Mutation Annotation Format files (.maf). The genes are replicated in rows but I don't know why?
    Can anyone help in this issue?
    Thanks

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