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  • migs54
    Junior Member
    • Nov 2012
    • 7

    #1

    UCSC upload error

    Has anyone seen an error like this while trying to upload a bedgraph.gz to UCSC:

    Warning/Error(s):

    Can't start query:
    select genome from dbDb where name = 'hg19'
    mySQL error 2013: Lost connection to MySQL server during query


    My bedGraph.gz is 283MB

    head hESC.bedgraph

    track type=bedGraph name=hESC
    chr1 14388 14398 1
    chr1 14398 14402 2
    chr1 14402 14438 3
    chr1 14438 14448 2
    chr1 14448 14452 1
    chr1 14586 14636 1
    chr1 14702 14703 1
    chr1 14703 14705 2
    chr1 14705 14712 3

    The genome was already selected as hg19 so I'm not sure why that shows up in the error message.

    Any suggestions welcome!

    Thanks

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