Header Leaderboard Ad

Collapse

Extracting gene list from hierarchical clustering

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • Extracting gene list from hierarchical clustering

    We have conducted an experiment where we have sequenced metastases to four different organs. The raw data have been analyzed via TopHat/Bowtie and Cufflinks/Cuffdiff so far. One of the next tasks I've been asked to complete is to perform an unsupervised analysis in the form of hierarchical clustering, and then to use this to select the genes which cluster best with one specific organ. Can anyone advise me as to how I can use Bioconductor to manage this task? Both the hierarchical clustering with all the genes, and the extraction of the gene list itself.

    Thanks a lot!

  • #2
    Might csSpecificity() be what I am looking for, perhaps?

    Comment

    Latest Articles

    Collapse

    • seqadmin
      Improved Targeted Sequencing: A Comprehensive Guide to Amplicon Sequencing
      by seqadmin



      Amplicon sequencing is a targeted approach that allows researchers to investigate specific regions of the genome. This technique is routinely used in applications such as variant identification, clinical research, and infectious disease surveillance. The amplicon sequencing process begins by designing primers that flank the regions of interest. The DNA sequences are then amplified through PCR (typically multiplex PCR) to produce amplicons complementary to the targets. RNA targets...
      03-21-2023, 01:49 PM
    • seqadmin
      Targeted Sequencing: Choosing Between Hybridization Capture and Amplicon Sequencing
      by seqadmin




      Targeted sequencing is an effective way to sequence and analyze specific genomic regions of interest. This method enables researchers to focus their efforts on their desired targets, as opposed to other methods like whole genome sequencing that involve the sequencing of total DNA. Utilizing targeted sequencing is an attractive option for many researchers because it is often faster, more cost-effective, and only generates applicable data. While there are many approaches...
      03-10-2023, 05:31 AM

    ad_right_rmr

    Collapse

    News

    Collapse

    Topics Statistics Last Post
    Started by seqadmin, 03-24-2023, 02:45 PM
    0 responses
    11 views
    0 likes
    Last Post seqadmin  
    Started by seqadmin, 03-22-2023, 12:26 PM
    0 responses
    14 views
    0 likes
    Last Post seqadmin  
    Started by seqadmin, 03-17-2023, 12:32 PM
    0 responses
    17 views
    0 likes
    Last Post seqadmin  
    Started by seqadmin, 03-15-2023, 12:42 PM
    0 responses
    22 views
    0 likes
    Last Post seqadmin  
    Working...
    X