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  • luuloi
    Junior Member
    • Feb 2013
    • 5
    #1

    Calculate RPKM from BED file input, please help?

    Hi,

    In some public RNA-seq data, it only available BED file as follow:

    Assembly strand Start End readA readB id
    1 - 4856258 4856285 ACACTCACACTACTAC... .... 2
    ...

    Can I calculate the FPKM from this file as input? Please show me how? Any suggestion would be nice!

    Thanks,
    Loi
    Tags: None
    • rohitngs
      Member
      • Jul 2012
      • 14
      #2
      Where did you get the bed file from??
      I want some source to download bed files for bacteria

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