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Hi,
This is Shrujan kumar Madadha, I had an error while running QC for Drosophila Yukuba fastq RNA file using Sequence_QC.sh file of FASTX Toolkit. So please guide me to resolve the follwing error:
shrujan@ubuntu:~/NGS_Practice/RNA$ sh Sequence_QC.sh SRR530661_1.fastq -o DY_RNA_QC
awk: program limit exceeded: maximum number of fields size=32767
FILENAME="SRR530661_1.tab" FNR=1 NR=1
Sequence_QC.sh: 30: Sequence_QC.sh: xgawk: not found
Segmentation fault (core dumped)
I couldn't understand why it is stopped. Can anyone please guide me with the perfect solution.
Thank you and i hope a quick reply.
This is Shrujan kumar Madadha, I had an error while running QC for Drosophila Yukuba fastq RNA file using Sequence_QC.sh file of FASTX Toolkit. So please guide me to resolve the follwing error:
shrujan@ubuntu:~/NGS_Practice/RNA$ sh Sequence_QC.sh SRR530661_1.fastq -o DY_RNA_QC
awk: program limit exceeded: maximum number of fields size=32767
FILENAME="SRR530661_1.tab" FNR=1 NR=1
Sequence_QC.sh: 30: Sequence_QC.sh: xgawk: not found
Segmentation fault (core dumped)
I couldn't understand why it is stopped. Can anyone please guide me with the perfect solution.
Thank you and i hope a quick reply.