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  • how to use the *.bam data to get the fasta file

    Hi everyone,

    I'm a beginner in RNA-seq analysis. I hope I would be able to get some help even though my question sounds very basic.

    I wonder if there's any software that can convert *.bam or *.gtf format directly to the fasta file format.

    I've searched the question but got nothing.

    Thanks so much!!

  • #2
    There are some tools there, check this post.

    http://seqanswers.com/forums/showthread.php?t=7061

    And I like bamtool:
    Bamtools (http://github.com/pezmaster31/bamtools)

    Comment


    • #3
      Thanks, arkilis! I will check the usage of samtools and bamtools.
      Thank you very much!

      Comment

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