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Hi,
I am working on a method to cluster RNA-seq data for species that don't have a close genome reference. For example, a species for which the closest available whole-genome assembly is another species that diverged 50MYA or more.
Preliminary results are promising for 454 data, but I want to try this on Solexa reads, ideally 75bp or longer. I haven't seen any publicly available datasets submitted yet, but if anyone has them and is looking for ways to analyse them, please contact me.
Cheers,
--
Dr. Albert J. Vilella
Ensembl Comparative Genomics
European Bioinformatics Institute - EMBL
Wellcome Trust Genome Campus, Cambridge, UK
I am working on a method to cluster RNA-seq data for species that don't have a close genome reference. For example, a species for which the closest available whole-genome assembly is another species that diverged 50MYA or more.
Preliminary results are promising for 454 data, but I want to try this on Solexa reads, ideally 75bp or longer. I haven't seen any publicly available datasets submitted yet, but if anyone has them and is looking for ways to analyse them, please contact me.
Cheers,
--
Dr. Albert J. Vilella
Ensembl Comparative Genomics
European Bioinformatics Institute - EMBL
Wellcome Trust Genome Campus, Cambridge, UK