Hello, I would simply like to asses the expression levels of all types of repetitive elements in my RNA-Seq samples.
I assume that these are not being aligned in the first place by TopHat2?
Could someone tell me a way of doing this?
Thanks!
Alex
I assume that these are not being aligned in the first place by TopHat2?
Could someone tell me a way of doing this?
Thanks!
Alex
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