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  • miaom
    Member
    • Oct 2012
    • 12

    DEXSeq - condition / group level average

    I am using DEXSeq to find deferentially expressed exons. But I wonder except for the statistics, is it possible to calculate the average/mean of the exon expressions in each condition/groups? If true, how?

    Thanks!
  • areyes
    Senior Member
    • Aug 2010
    • 165

    #2
    Hi @miaom,

    Yes, it is possible! Have a look at the estimatelog2FoldChanges function. It has options to extract the coefficients from the glm corresponding to the exon usage coefficients.

    Alejandro

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