Hi
I have separate fasta files for each chromosome of the cow genome. I need to build bowtie2 indices for later tophat alignment. What's the best way to go from here:
Do I cat all fasta files into one fast file or do I just run bowtie build on the separate fasta files ?
Thanks a lot
Alyaa
I have separate fasta files for each chromosome of the cow genome. I need to build bowtie2 indices for later tophat alignment. What's the best way to go from here:
Do I cat all fasta files into one fast file or do I just run bowtie build on the separate fasta files ?
Thanks a lot
Alyaa
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