Adapter trimming

[figo1019]

Hi

I have got the adapter sequences from company as for Illumina RNA seq data:
5-AATGATACGGCGACCACCGAGATCTACACGTTCAGAGTTCTACAGTCCGACGATC-(insert)-ACCTTAAGAGCCCACGGTTCCTTGAGGTCAGTGXXXXXXTAGAGCATACGGCAGAAGACGAAC-3

(ID #1 "ATCACG" )

Will this be my adapter sequences to trim it using trimmomatic?
>adpter1
AATGATACGGCGACCACCGAGATCTACACGTTCAGAGTTCTACAGTCCGACGATC
>adapter2
ACCTTAAGAGCCCACGGTTCCTTGAGGTCAGTGATCACGTAGAGCATACGGCAGAAGACGAAC

or I have to reverse complement the adapter ?

Best Regards

[mastal]

Have a look at the TruSeq adapter files that come with trimmomatic,
and see how they compare to the sequences you have.

[jamie225]

what does these adaptors have in common?