What to do after Cufflinks results???

kashif_nawaz

Junior Member

Join Date: Jun 2014

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#1

What to do after Cufflinks results???

06-07-2014, 12:35 PM

Hi..
I have a list of genes from cufflinks from one organism (Oryza sativa indica). All gene are important to be functionally categorize. I want to perform GO and other same stuffs from blast2go. How can I do it? Or can I use any other fast technique other than blast2go? Please suggest me...
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gringer

David Eccles (gringer)

Join Date: May 2011

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06-08-2014, 03:20 AM

You can get GO terms for ensembl-annotated genomes directly from ensembl biomart. Fortuitously, Oryza sativa indica is one such genome.

If that link doesn't quite work, choose dataset "Oryza sativa Indica Group genes", and attributes "GO term accession; GO term name; GO term definition; GO term evidence code; GO domain".
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