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  • shirley0818
    Member
    • Apr 2013
    • 13
    #1

    how to visualize a few hundreds RNAseq samples in IGV/GenomeBrowser

    Hi All,

    I have been using IGV tool to visualize my RNASeq data from a few samples by creating a .tdf file for each sample.

    Now I have 100 samples from Group A, and another 100 samples from Group B. I have identified genes differentially expressed between these two groups.

    Now I would like to view these genes using IGV or other tools to see the read difference between Group A and B. Can I just create 1 tdf/wig file by merging all 100 bam files of Group A, and create another tdf/wig file for Group B, then load in IGV/Genome Browser to view those candidate genes?

    Many thanks,
    Shirley
    Tags: None
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