Basic miRNA analysis from TCGA data?

rockquark

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Join Date: Apr 2015

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Basic miRNA analysis from TCGA data?

04-21-2015, 09:23 AM

Hi All,

I'm fairly new with miRNA analysis and have been teaching myself how to analyze the data (so please forgive me for my naive question). I gathered miRNA data from TCGA for the DLBCL data. This is level 3 data type. So I'm assuming that this data is already normalized and all the pre-processing has been done (is my first assumption correct?).

So now, can I start with my analysis by taking a log2 transform of the "reads per million miRNA mapped" and then applying FDR statistics? Or are there other steps to consider for the level 3 miRNA TCGA data sets before I start?

Any help or information will be much appreciated.

Thanks in advance for your help!
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